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Gross Lab Publications
[Publications from 1983 to the present represent contributions originating
from this laboratory. Those marked by an asterisk (*) indicate collaborations
between a member of this lab and other laboratories in the field.]
Regulation and Function of the Heat Shock Protein
Herman
C, Prakash S, Lu CZ, Matouschek
A, Gross CA. 2003.
Lack of a Robust Unfoldase Activity Confers a Unique Level
of Substrate Specificity to the Universal AAA Protease FtsH.
Mol Cell. 11:659-669.
Ades
SE, Grigorova IL, Gross CA. 2003. Regulation
of the Alternative Sigma Factor sigma(E) during Initiation,
Adaptation, and Shutoff of the Extracytoplasmic Heat Shock
Response in Escherichia coli. J Bacteriol. 185:2512-2519.
Walsh
NP, Alba BM, Bose B, Gross CA, Sauer RT. 2003.
OMP Peptide Signals Initiate the Envelope-Stress Response
by Activating DegS Protease via Relief of Inhibition Mediated
by Its PDZ Domain. Cell. 113:61-71.
Alba
BM, Leeds JA, Onufryk C, Lu CZ, Gross CA. 2002.
DegS and YaeL participate sequentially in the cleavage of
RseA to activate the sigmaE-dependent extracytoplasmic stress
response. Genes Dev. 16:2156-2168.
Wang
JD, Herman C, Tipton KA, Gross CA, Weissman JS. 2002.
Directed evolution of substrate-optimized GroEL/S chaperonins.
Cell. 111:1027-1039.
Alba
B.M., Zhong H.J., Pelayo J.C., Gross C.A. 2001.
degS (hhoB) is an essential Escherichia coli gene
whose indispensable function is to provide sigma activity.
Mol. Microbiol. 40(6):1323-33.
Behrens
S., Maier R., de Cock H., Schmid F.X., Gross C.A. 2001.
The SurA periplasmic
PPIase lacking its parvulin domains functions in vivo and
has chaperone activity. EMBO J. 20(1-2):285-94.
Suh W.C., C.Z. Lu, and C.A. Gross. 1999. Structural
features required for the interaction of the Hsp70 molecular
chaperone DnaK with its cochaperone DnaJ. J Biol Chem.
274(43):30534-9.
Ades S.E., L.E. Connolly, B.M. Alba, and C.A. Gross. 1999.
The Escherichia coli sigmaE-dependent extracytoplasmic stress
response is controlled by the regulated proteolysis of an
anti-sigma factor. Genes Dev. 13(18):2449-61.
Suh W.C., W.F. Burkholder, C.Z. Lu, X. Zhao, M.E. Gottesman, and
C.A. Gross. 1998. Interaction of the Hsp70 molecular
chaperone, DnaK, with its cochaperone DnaJ. Proc Natl Acad
Sci USA. 95(26):15223-8.
de
las Peñas A., L. Connolly, and C.A. Gross. 1997.
sigmaE is an essential sigma factor in Escherichia coli.
J Bacteriol. 179(21):6862-4.
Connolly
L., A. de las Peñas,
B.M. Alba, and C.A. Gross. 1997. The response to
extracytoplasmic stress in Escherichia coli is controlled
by partially overlapping pathways. Genes Dev. 11(15):2012-21.
de las Peñas A., L. Connolly, and C.A. Gross. 1997.
The sigmaE-mediated response to extracytoplasmic stress
in Escherichia coli is transduced by RseA and RseB,
two negative regulators of sigmaE. Mol Microbiol. 24(2):373-85.
Rouviére P.E., and C.A. Gross. 1996. SurA, a
periplasmic protein with peptidyl-prolyl isomerase activity,
participates in the assembly of outer membrane porins. Genes
Dev. 10(24):3170-82.
Wild J., P. Rossmeissl, W.A. Walter, and C.A. Gross. 1996.
Involvement of the DnaK-DnaJ-GrpE chaperone team in protein
secretion in Escherichia coli. J Bacteriol.
1996 178(12):3608-13.
Mecsas, J., R. Welch, J.W.Erickson, and C. A.
Gross. 1995. Identification and characterization
of an outer membrane protein, OmpX, in Escherichia coli
that is homologous to a family of outer membrane proteins
including Ail of Yersinia. J. Bacteriol. 177:
799-804.
Rouviére, P.E., A. de las Peñas, J. Mecsas, C.Z. Lu,
K.E. Rudd and C.A. Gross. 1995. rpoE, the
gene encoding the second heat-shock sigma factor, sigmaE,
in Escherichia coli. EMBO J. 14: 1032.
Kamath-Loeb, A., C.Z. Lu, W.C. Suh, M.A. Lonetto,
and C.A. Gross. 1995. Analysis of three DnaK mutant
proteins suggests that progression through the ATPase cycle
requires conformational changes. J. Biol. Chem. 270:30051-30059
Wild, J., W.A. Walter, C.A. Gross and E. Altman.
1993. Accumulation of secretory protein precursors
in E. coli induces the heat shock response. J. Bacteriology.
175: 3992-3997.
Mecsas,
J., P.E. Rouviére, J.W. Erickson, T.J. Donohue and C.A. Gross.
1993. The activity of sigmaE, an Escherichia coli
heat-inducible sigma factor, is modulated by expression of
outer membrane proteins. Genes and Dev. 7: 2618-2628.
Zhou, Y.N., W.A. Walter and C.A. Gross. 1992.
A mutant sigma32 with a small deletion in conserved region
3 of sigma has reduced affinity for core RNA polymerase. J.
Bacteriol. 174: 5005-5012.
Zhou, Y.N. and C.A. Gross. 1992. How
a mutation in the gene encoding sigma70 suppresses the defective
heat shock response caused by a mutation in the gene encoding
sigma32. J. Bacteriol. 174: 7128-7137.
Wild, J., E. Altman, T. Yura and C.A. Gross.
1992. The DnaK and DnaJ heat shock proteins participate
in protein export in E. coli. Genes and Dev.
6: 1165-1172.
Wild, J., A. Kamath-Loeb, E. Ziegelhoffer, M.
Lonetto, Y. Kawasaki and C.A. Gross. 1992. Partial
loss of function mutations in DnaK, the E. coli homologue
of the 70-kDa heat shock proteins, affect highly conserved
amino acids implicated in ATP binding and hydrolysis. Proc.
Natl. Acad. Sci. USA. 89: 7139-7143.
Shi, W., Y.N. Zhou, J. Wild, J. Adler and C.A.
Gross. 1992. DnaK, DnaJ, and GrpE are required
for flagellum synthesis in E. coli. J. Bacteriology.
174: 6256-6263.
Kamath-Loeb, A.S. and C.A. Gross. 1991.
Translational regulation of sigma32 synthesis - requirement
for an internal control element. J. Bacteriol. 173:
3904-3906.
Straus D., W. Walter, and C.A. Gross. 1994. DnaK, DnaJ,
and GrpE heat shock proteins negatively regulate heat shock
gene expression by controlling the synthesis and stability
of sigma32. Genes Dev. 4:2202-9.
Gross, C.A., D.B. Straus, J.W. Erickson and
T. Yura. 1989. The function and regulation of heat
shock proteins in E. coli. In: The role of the heat
shock or stress response in biology and medicine. Cold
Spring Harbor.
Erickson, J. and C.A. Gross. 1989.
Identification of the sigmaE subunit of Escherichia coli
RNA polymerase. Genes Dev. 3: 1462-1471.
Straus, D.B., W.A. Walter and C.A. Gross.
1989. The activity of sigma32 is reduced under conditions
of excess heat shock protein production in E. coli.
Genes Dev. 3: 2003-2010.
Straus, D.B., W.A. Walter and C.A. Gross.
1988. Escherichia coli heat shock gene mutants
are defective in proteolysis. Genes Dev. 2: 1851-1858.
Zhou, Y.-N., N. Kusukawa, J.W. Erickson, C.A.
Gross and T. Yura. 1988. Isolation and characterization
of E. coli mutants that lack the heat shock sigma factor
sigma32. J. Bacteriol. 170: 3540-3649.
Erickson, J., V. Vaughn, W.A. Walter, F.C. Neidhardt
and C.A. Gross. 1987. Regulation of the promoters
and transcripts of rpoH, the Escherichia coli heat
shock regulatory gene. Genes Dev. 1: 419-432.
Grossman, A., D. Straus, W.A. Walter and C.A.
Gross. 1987. sigma32 synthesis can regulate the
synthesis of heat shock proteins in Escherichia coli.
Genes Dev. 1: 179-184.
Erickson, J., V. Vaughn, W.A. Walter, F.C. Neidhardt
and C.A. Gross. 1987. Regulation of the promoters
and transcripts of rpoH, the Escherichia coli heat
shock regulatory gene. Genes Dev. 1: 419-432.
Grossman, A., D. Straus, W.A. Walter and C.A.
Gross. 1987. sigma32 synthesis can regulate the
synthesis of heat shock proteins in Escherichia coli.
Genes Dev. 1: 179-184.
Straus, D.B., W.A. Walter and C.A. Gross.
1987. The heat shock response of E. coli is
regulated by changes in the concentration of sigma32. Nature.
329: 348-351.
*Bahl, H., H. Echols, D.B. Straus, D. Court,
R. Crowl and C.P. Georgopoulos. 1987. Induction
of the heat shock response of E. coli through stabilization
of sigma32 by the phage lambda cIII protein. Genes Dev.
1: 57-64.
*Tilly, K., J. Erickson, S. Sharma and C. Georgopoulos.
1986. Heat shock regulatory gene rpoH mRNA level
increases after heat shock in Escherichia coli. J.
Bacteriol. 168: 1155-1158.
Cowing, D.W., J.C. Bardwell, E.A. Craig, C. Woolford,
R.W. Hendrix and C.A. Gross. 1985. Consensus sequence
for Escherichia coli heat shock gene promoters. Proc.
Natl. Acad. Sci. USA. 82: 2679-2683.
Grossman, A.D., W.E. Taylor, Z.F. Burton, R.R.
Burgess and C.A. Gross. 1985. Stringent response
in Escherichia coli induces expression of heat shock
proteins. J. Mol. Biol. 186: 357-365.
Grossman, A.D., J.W. Erickson, and C.A. Gross.
1984. The htpR gene product of E. coli
is a sigma factor for heat shock promoters. Cell. 38:
383-390.
*Landick, R.V. Vaughn, E.T. Lau, R.A. Van Bogelen,
J.W. Erickson and F.C. Neidhardt. 1984. Nucleotide
sequence of the heat shock regulatory gene of E. coli
suggests its protein product may be a transcription factor.
Cell. 38: 175-182.
Taylor, W.E., D.B. Straus, A.D. Grossman, Z.F.
Burton, C.A. Gross and R.R.Burgess. 1984. Transcription
from a heat-inducible promoter causes heat shock regulation
of the sigma subunits of E. coli RNA polymerase. Cell.
38: 371-381.
Baker, T.A., A.D. Grossman and C.A. Gross.
1984. A gene regulating the heat shock response in
Escherichia coli also affects proteolysis. Proc.
Natl. Acad. Sci. USA. 81: 6779-6783.
|
Genetics and Biochemistry of E.
coli RNA Polymerase
Young
BA, Gruber TM, Gross CA. 2004. Minimal machinery
of RNA polymerase holoenzyme sufficient for promoter melting.
Science. 303(5662):1382-4.
Campbell
E.A., Tupy J.L., Gruber T.M., Wang S., Sharp M.M., Gross
C.A., Darst, S.A. 2003. Crystal Structure of
Escherichia coli sigmaE with the Cytoplasmic Domain
of Its Anti-sigma RseA. Mol. Cell. 11:1067-1078.
Young
B.A., Anthony L.C., Gruber T.M., Arthur T.M., Heyduk E.,
Lu C.Z., Sharp
M.M., Heyduk T., Burgess R.R., Gross C.A. 2001.
A coiled-coil from the RNA polymerase beta' subunit allosterically
induces selective nontemplate strand binding by sigma70.
Cell. 105(7):935-44.
Gruber
T.M., Markov D., Sharp M.M., Young B.A., Lu C.Z., Zhong
H.J., Artsimovitch I., Geszvain K.M., Arthur T.M., Burgess
R.R., Landick R., Severinov K., Gross C.A. 2001.
Binding of the initiation factor sigma70 to core RNA polymerase
is a multistep process. Mol. Cell. 8(1):21-31.
Chan
C.L., Gross CA. 2001. The Anti-initial Transcribed
Sequence, a Portable Sequence That Impedes Promoter Escape,
Requires sigma70 for Function. J. Biol. Chem. 276(41):38201-9.
Cicero
M.P., Sharp M.M., Gross C.A., Kreuzer K.N. 2001.
Substitutions in bacteriophage T4 AsiA and Escherichia coli
sigma70 that suppress T4 motA activation mutations. J.
Bacteriol. 183(7):2289-97.
Sharp M.M., C.L. Chan, C.Z. Lu, M.T. Marr, S. Nechaev, E.W. Merritt,
K. Severinov, J.W. Roberts, and C.A. Gross. 1999.
The interface of sigma with core RNA polymerase is extensive,
conserved, and functionally specialized. Genes Dev.
13(22):3015-26.
Lonetto, M.A., V. Rhodius, K. Lamberg, P. Kiley, S. Busby, and
C. Gross. 1998. Identification of a contact site
for different transcription activators in region 4 of the
Escherichia coli RNA polymerase sigma70 subunit.
JMB. 284(5):1353-65.
Tavormina P.L., R. Landick, and C.A. Gross. 1996. Isolation,
purification, and in vitro characterization of recessive-lethal-mutant
RNA polymerases from Escherichia coli. J Bacteriol.
178(17):5263-71.
Dombroski A.J., B.D. Johnson, M. Lonetto, and C.A. Gross.
1996. The sigma subunit of Escherichia coli RNA
polymerase senses promoter spacing. Proc Natl Acad Sci
USA. 93(17):8858-62.
Heisler L.M., G.Feng, D.J. Jin, C.A. Gross, and R. Landick.
1996. Amino acid substitutions in the two largest
subunits of Escherichia coli RNA polymerase that suppress
a defective Rho termination factor affect different parts
of the transcription complex. J Biol Chem. 271(24):14572-83.
Tavormina, P., W. Reznikoff, and C. A. Gross. 1996.
Identifying interacting regions in the beta subunit of Escherichia
coli RNA polymerase. J. Molec. Biol. 258(2):
213-23.
*Potúcková, G.H. Kelemen, K.C. Findlay, M.A. Lonetto,
M.J. Buttner, and J. Kormanec. 1995. A new RNA
polymerase sigma factor, sigmaF, is required for the late
stages of morphological differentiation in Streptomyces
spp. Molec. Microbiol. 17: 37-48.
Tavormina, P., R. Landick, and C. A. Gross. 1996. Isolation
and characterization of defective Escherichia coli
RNA polymerase rpoB mutations. J. Bacteriol.
178(17): 5263-71.
*Lonetto, M., K.L. Brown, K. Rudd and M.J. Buttner. 1994.
Analysis of the Streptomyces coelicolor sigE gene
reveals a new sub-family of eubacterial RNA polymerase sigma
factors involved in the regulation of extracytoplasmic function.
Proc. Natl. Acad. Sci. USA. 91: 7573-7577.
McDowell, J., J.Roberts, D.J. Jin, and C.A. Gross.
1994. Intrinsic transcription termination efficiency
is determined by RNA polymerase elongation rate. Science.
266: 822-825.
Singer, M., D.J. Jin, W.A. Walter and C.A. Gross. 1993.
Genetic evidence for the interaction between cluster I and
cluster III rifampicin resistant mutations. J. Mol. Biol.
231: 1-5.
Dombroski, A.J., W.A. Walter and C.A. Gross.
1993. Amino-terminal Amino Acids Modulate Sigma Factor
DNA Binding Activity. Genes Dev. 7: 2446-2455.
Dombroski A.J., W.A. Walter, and C.A. Gross. 1993.
The role of the sigma subunit in promoter recognition by
RNA polymerase. Cell Mol Biol Res. 39(4):311-7.
Heisler, L.M., H. Suzuki, R. Landick and C.A.
Gross. 1993. Amino-terminal Amino Acids Modulate
Sigma Factor DNA Binding Activity. Genes Dev. 7:
2446-2455.
Heisler, L.M., H. Suzuki, R. Landick and C.A.
Gross. 1993. Four contiguous amino acids define
the target for streptolydigin resistance in the beta subunit
of Escherichia coli RNA Polymerase. J. Biol. Chem.
268: 25369-25375.
Jin, D.J., R.R. Burgess, J.P. Richardson and
C.A. Gross. 1992. Termination efficiency at Rho-dependent
terminators depends on "kinetic coupling" between RNA plymerase
and Rho. Proc. Natl. Acad. Sci. 89: 1453-1457.
Dombroski, A.J., W.A. Walter, M.T. Record, D.A. Siegele and C.A.Gross.
1992. Polypeptides containing highly conserved regions
of Transcription initiation factor sigma70 exhibit specificity
of binding to promoter DNA. Cell. 70: 501-512.
Jin, D.J. and C.A. Gross. 1991. RpoB8,
a rifampicin-resistant termination proficient RNA polymerase,
has an increased Km for purine nucleotides during transcription
elongation. J. Biol. Chem. 266: 14478-14485.
Mecsas, J., D.W. Cowing, and C.A. Gross.
1991. Development of RNA polymerase-promoter contacts
during open complex formation. J. Mol. Biol. 220:
585-97.
*Hager, D., D.J. Jin, and R.R. Burgess. 1990.
Use of MonoQ high resolution ion exchange chromatography
to obtain pure and active E. coli RNA polymerase.
Biochemistry. 29: 7890-7894.
Jin, D.J. and C.A. Gross. 1989. Three
rpoBC mutations that suppress the termination defects
of rho mutants also affect the functions of nusA
mutants. Mol. Gen. Genet. 216: 269-275.
Siegele, D.A., J.C. Hu, W.A. Walter, and C.A.
Gross. 1989. Altered promoter recognition by
mutant forms of the sigma70 subunit of Escherichia
coli RNA polymerase. J. Mol. Biol. 206: 591-603.
Cowing, D.W. and C.A. Gross. 1989.
The interaction of E. coli RNA polymerase holoenzyme
containing sigma32 with heat shock promoters: DNase I footprinting
and methylation protection. J. Mol. Biol. 210: 513-520.
Cowing, D.W., J. Mecsas, M.T. Record, Jr., and
C.A. Gross. 1989. Intermediates in the formation
of the open complex by RNA polymerase holoenzyme containing
the sigma factor sigma32 at the groE promoter. J.
Mol. Biol. 210: 521-530.
Jin, D.J. and C.A. Gross. 1989. Characterization
of the pleiotropic phenotypes of E. coli rifampicin
resistant mutants. J. Bact. 171: 5229-5231.
Jin, D.J. and C.A. Gross. 1988. Mapping
and sequencing of mutations in the E. coli rpoB
gene that lead to rifampicin resistance. J. Mol. Biol.
202: 45-58.
Jin, D.J., W.A. Walter and C.A. Gross. 1988.
Characterization of the termination phenotypes of rifampicin
resistant mutants. J. Mol. Biol. 202: 245-253.
Jin, D.J., M. Cashel, D.I. Friedman, Y. Nakamura,
W.A. Walter and C.A. Gross. 1988. The effects
of rifampicin resistant rpoB mutations on antitermination
and interaction with NusA in E. coli. J. Mol Bio.
204: 247-261.
Hu, J.C. and C.A. Gross. 1988. Mutations
in rpoD that increase expression of genes in the
mal regulon of Escherichia coli K12.
J. Mol. Biol. 203: 15-27.
Siegele, D.A., J.C. Hu and C.A. Gross. 1988.
Mutations in rpoD, the gene encoding the sigma70
subunit of Escherichia coli RNA polymerase
that increase expression of the lac operon in the
absence of CAP-cAMP. J. Mol. Biol. 203: 29-37.
Hu, J.C. and C.A. Gross. 1985. Mutations
in the sigma subunit of E. coli RNA polymerase which
affect positive control of transcription. Mol. Gen. Genet.
199: 7-13.
Gross, C.A., A.D. Grossman, H. Liebke, W.A. Walter
and R.R. Burgess. 1984. Effects of the mutant
sigma allele rpoD800 on the synthesis of specific
macromolecular components of the E. coli K12 cell.
J. Mol. Biol. 172: 283-300.
Grossman, A. D., A. Ullmann, R.R. Burgess and
C.A. Gross. 1984. Regulation of the cAMP synthesis
in E. coli K12: Effects of the rpoD800 sigma
mutation, glucose and chloramphenicol. J. Bacteriol.
158: 110-114.
Grossman, A. D., R.R. Burgess, W.A. Walter and
C.A. Gross. 1983. Mutations in the lon
gene of E. coli K12 phenotypically suppress a mutation
in the sigma subunit of RNA polymerase. Cell. 32:
151-159.
Burton, Z.F., C.A. Gross, K.K. Watanabe and R.R.
Burgess. 1983. The operon that encodes the sigma
subunit of RNA polymerase also encodes ribosomal protein
S21 and DNA primase in E. coli K12. Cell.
32: 335-349.
Hu, J. and C.A. Gross. 1983. Marker
rescue with plasmids bearing deletions in rpoD identifies
a dispensable part of E. coli sigma factor. Molec.
Gen. Genet. 191: 492-498.
Lowe, P., U. Aebi, C.A. Gross and R.R. Burgess.
1981. In vitro thermal inactivation of a
temperature sensitive sigma subunit mutant (rpoD800)
of Escherichia coli RNA polymerase proceeds by aggregation.
J. Biol. Chem. 256: 2010-2015.
Burton, Z., R.R. Burgess, J. Lin, D. Moore, S.
Holder and C.A. Gross. 1981. The nucleotide sequence
of the cloned rpoD gene for the RNA polymerase sigma
subunit from E. coli K12. Nucl. Acid Res.
9: 2889-2903.
Liebke, H., C.A. Gross, W.A. Walter and R.R.
Burgess. 1980. A new mutation rpoD800
affecting the sigma subunit is allelic to two other sigma
mutants. Mol. Gen. Genet. 177: 277-282.
Burgess, R.R., C.A. Gross, W.A. Walter and P.
Lowe. 1979. Altered chemical properties in three
mutants of E. coli RNA polymerase sigma subunit.
Mol. Gen. Genet. 175: 251-257.
Gross, C.A., F. Blattner, W. Taylor, P. Lowe
and R.R. Burgess. 1979. Isolation and characterization
of transducing phage coding for sigma subunit of E. coli
RNA polymerase. Proc. Natl. Acad. Sci. USA. 76: 5789-5793.
Gross, C.A., J. Hoffman, C. Ward, D. Hager, G.
Burdick, H. Berger and R.R. Burgess. 1978. A
mutation affecting thermostability of the sigma subunit
of E. coli RNA polymerase lies near the dnaG
locus at about 66 min on the E. coli genetic map.
Proc. Natl. Acad. Sci. USA. 75: 427-431.
deHaseth PL; Gross CA; Burgess RR; Record MT
Jr. 1977 Measurement of binding constants for
protein-DNA interactions by DNA-cellulose chromatography.
Biochem. 16: 4777-4783.
Engbaek, F., C.A. Gross and R.R. Burgess.
1976. Quantitation of RNA polymerase subunits in
Escherichia coli during exponential growth and after
bacteriophage T4 infection. Molec. Gen. Genet. 143:
291-295.
Engbaek, F., C.A. Gross and R.R. Burgess.
1976. Biosynthesis of Escherichia coli RNA
polymerase subunits upon release of rifampicin inhibition.
Molec. Gen. Genet. 143: 297-299.
Gross, C., F. Engbaek, T. Flammang and R.R. Burgess.
1976. A rapid micro-purification for E. coli
DNA-dependent RNA polymerase and the preparation of bacterial
extracts active in RNA synthesis. J. Bacteriol. 128:
382-389.
Burgess, R.R., C.A. Gross and F. Engbaek.
1976. Cysteine and methioinine content of the E.
coli RNA polymerase subuntis. J. Bacteriol. 128:
389-393.
|
Genomic Analysis of E. coli Gene Regulation
*Khodursky
AB, Bernstein JA, Peter BJ, Rhodius V, Wendisch VF, Zimmer
DP. 2003. Escherichia coli spotted double-strand
DNA microarrays: RNA extraction, labeling, hybridization,
quality control, and data management.
Methods Mol Biol. 224:61-78.
Li
H, Rhodius V, Gross C, Siggia ED. 2002. Identification
of the binding sites of regulatory proteins in bacterial
genomes. Proc Natl Acad Sci USA. 99:11772-11777.
|
Reviews & Book Chapters
Gruber
TM, Gross CA. 2003.
Multiple sigma subunits and the partitioning of bacterial
transcription space. Annu Rev Microbiol. 57:441-66.
Gruber
TM, Gross CA. 2003. Assay of Escherichia coli
RNA polymerase: sigma-core interactions. Methods Enzymol.
370:206-12.
Rhodius
VA, LaRossa RA. 2003. Uses and pitfalls of microarrays for studying transcriptional regulation.
Curr Opin Microbiol. 6(2):114-9.
Rhodius
V, Van Dyk TK, Gross C, LaRossa RA. 2002. Impact
of genomic technologies on studies of bacterial gene expression.
Annu Rev Microbiol. 56:599-624.
Young
BA, Gruber TM, Gross CA. 2002. Views of transcription
initiation.
Cell. 109:417-420.
Herman, C. and C.A. Gross. 2000. Heat
stress. In: Encyclopedia of Microbiology. Vol. 2:598-606.
Academic Press.
Connolly, L., T. Yura, C.A. Gross. 1999.
Autoregulation of the Heat Shock Response in Procaryotes.
In: Molecular Chaperones and Folding Catalysts: Regulation,
Cellular Function and Mechanisms. pp. 13-33. Bernd Bukau,
Ed. Harwood Academic Publishers Amsterdam.
Gross, C.A., C. Chan, A. Dombroski, T. Gruber, M. Sharp, J. Tupy,
and B. Young. 1998. The functional and regulatory
roles of sigma factors in transcription. Cold Spring
Harb Symp Quant Biol. 63:141-55.
Chan, C.L., M.A. Lonetto, and C.A. Gross. 1996. Sigma
domain structure: one down, one to go. Structure.
4(11):1235-8.
Gross, C.A., C.L. Chan, M.A. Lonetto. 1996. A structure/function
analysis of Escherichia coli RNA polymerase. Philos
Trans R Soc Lond B Biol Sci. 351(1339):475-82. Review.
Lonetto, M., M. Gribskov, and C.A. Gross.1992. The
sigma70 family: sequence conservation and evolutionary relationships.
J. Bacteriol. 174: 3843-49. Review.
Gross, C.A., M. Lonetto and R. Losick. 1992.
Bacterial sigma factors. In: Transcription Regulation,
Cold Spring Harbor Laboratory Press.
Craig, E.A. and C.A. Gross. 1991.
HSP70--The cellular thermometer? TIBS. 16: 135-140.
Singer, M., T.A. Baker, G. Schnitzler, S.M. Deischel,
M. Goel, W. Dove, K.J. Jaacks, A.D. Grossman, J.W. Erickson
and C.A. Gross. 1989. A collection of strains
containing genetically linked alternating antibiotic resistance
elements for genetic mapping of Escherichia coli.
Microbiol. Rev. 53: 1-24.
Reznikoff, W.S., D.A. Siegele, D.W. Cowing and
C.A. Gross. 1985. The regulation of transcription
initiation in bacteria. Ann. Rev. Genet. 19: 335-387.
Engbaek, F. C.A. Gross and R.R. Burgess.
1976. Biosynthesis of RNA polymerase. In: (Kjeldgaard
and Maaloe, eds.), Control of Ribosome Synthesis,
Alfred Benzon Symposium IX, pp 117-125.
|
Additional Topics
*Khodursky
AB, Bernstein JA, Peter BJ, Rhodius V, Wendisch VF, Zimmer
DP. 2003. Escherichia coli spotted double-strand
DNA microarrays: RNA extraction, labeling, hybridization,
quality control, and data management.
Methods Mol Biol. 224:61-78.
Singer M., P. Rossmiessl, B.M. Cali, H. Liebke, and C.A. Gross.
1991. The Escherichia coli ts8 mutation
is an allele of fda, the gene encoding fructose-1,6-diphosphate
aldolase. J Bacteriol. 173(19):6242-8.
Singer, M., W.A. Walter, B.M. Cali, H. Liebke,
R.L. Gourse and C.A. Gross. 1991. Physiological
effect of the fructose-1,6-diphosphate aldolase ts8
mutation on stable RNA synthesis in Escherichia coli.
J. Bacteriol. 173: 6249-6257.
Baker, T.A., M.M. Howe and C.A. Gross. 1983.
Mu dX, a derivative of Mu d1 (lac ApR) which makes
stable lacZ fusions at high temperature. J. Bacteriol.
156: 970-974.
deHaseth P.L., Gross C.A., Burgess R.R., Record M.T. Jr. 1977
Measurement of binding constants for protein-DNA interactions
by DNA-cellulose chromatography. Biochemistry. 16(22):4777-83.
von Hippel P.H., Revzin A., Gross C.A., Wang A.C. 1974
Non-specific DNA binding of genome regulating proteins as
a biological control mechanism: I. The lac operon:
equilibrium aspects. Proc Natl Acad Sci U.S.A. 71(12):4808-12.
Laiken S.L., Gross C.A., Von Hippel P.H. 1972 Equilibrium
and kinetic studies of Escherichia coli lac repressor-inducer
interactions. J Mol Biol. 66(1):143-55.
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1995-2007 The Carol A. Gross Laboratory, UCSF. All rights reserved.
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